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Accessing and sharing the benefits of the genomics revolution

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Advances in genetics, genomics and control of rice blast disease

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Advances in molecular breeding towards salinity and drought tolerance

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Algorithms in Bioinformatics : WABI 2003 Conference Proceedings

WABI met Sept. 15-20, 2003 in Budapest, Hungary and their entire 528-page conference-proceedings was published as part of the series Lecture Notes in Bioinformatics ISBN: 3-540-20076-2. The fulltext papers are accessible FREE from UC-based microcomputers. Non-UC users should consult their reference-librarian about access-privileges at their institution.

There are 36 papers listed at the site. Papers "focus on discrete algorithms that address important problems in molecular biology, genomics and genetics, that are founded on sound models, that are computationally efficient, that have been implemented and tested in simulations and on real datasets, and that provide new biological results."

Animal cell technology meets genomics: proceedings of the 18th ESACT meeting, Granada, Spain, May 11-14, 2003 /

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Applied computational genomics

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Applying genomic and proteomic microarray technology in drug discovery

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Bioinformatics and the cell: modern computational approaches in genomics, proteomics, and transcriptomics /

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Bioinformatics of genome regulation and structure II

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Bioinformatics research and development: first international conference, BIRD 2007, Berlin, Germany, March 12-14, 2007: proceedings /

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Biological and medical data analysis: 5th international symposium, ISBMDA 2004, Barcelona, Spain, November 18-19, 2004: proceedings /

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Bovine genomics

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Breeding strategies for sustainable forage and turf grass improvement

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Cancer genomics and proteomics: methods and protocols /

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Cancer genomics: molecular classification, prognosis and response prediction /

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Cancer informatics in the post genomic era: toward information-based medicine /

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Cardiovascular genomics: methods and protocols /

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Cereal genomics

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Chemical genomics: reviews and protocols /

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Chemical genomics: small molecule probes to study cellular function /

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Chemogenomics: methods and applications /

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Clinical applications of immunomics

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Clinical bioinformatics

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Comparative genomics: [Volume 2]

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Comparative genomics: international workshop, RECOMB-CG 2007, San Diego, CA, USA, September 16-18, 2007: proceedings /

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Comparative genomics: international workshop, RECOMB-CG 2008, Paris, France, October 13-15, 2008: proceedings /

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Comparative genomics: international workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009: proceedings /

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Comparative genomics: international workshop, RECOMB-CG 2010, Ottawa, Canada, October 9-11, 2010: proceedings /

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Comparative genomics: RECOMB 2004 International Workshop, RCG 2004, Bertinoro, Italy, October 16-19, 2004 ; revised selected papers /

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Comparative genomics: RECOMB 2005 international workshop, RCG 2005, Dublin, Ireland, September 18-20, 2005 ; proceedings /

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Comparative genomics: RECOMB 2006 international workshop, RCG 2006 Montreal, Canada, September 24-26, 2006: proceedings /

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Comparative genomics: using fungi as models: with 39 figures, 14 in color; and 20 tables, 1 in color /

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Comparative genomics: Volume 1

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Computational genomic signatures

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Computational life sciences II: second international symposium, CompLife 2006, Cambridge, UK, September 27-29, 2006: proceedings /

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Computational methods in systems biology : First International Workshop, CMSB 2003

31 selected papers from the conference: Computational methods in systems biology [electronic resource] : First International Workshop, CMSB 2003, Rovereto, Italy, February 2003 (Lecture Notes in Computer Science v.2602). Fulltext PDF-papers are free to users from UC-based microcomputers; non-UC users should consult their reference-librarian about access-privileges at their institution or go directly to http://www.springerlink.com/.
Six representative titles:

Cells as Computation;

Multiscale Modeling of Alternative Splicing Regulation;

An Overview of Data Models for the Analysis of Biochemical Pathways Computer Simulation of Protocells;

How to Solve Semantic Puzzles of Systems Biology;

Evolution as Design Engineer;

Inference, Modeling and Simulation of Gene Networks.

Computational methods in systems biology: First International Workshop, CMSB 2003, Rovereto, Italy, February 2003: proceedings /

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Computational methods in systems biology: International Conference CMSB 2004, Paris, France, May 26-28, 2004: revised selected papers /

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Computational methods in systems biology: international conference, CMSB 2006, Trento, Italy, October 18-19, 2006: proceedings /

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Computing for comparative microbial genomics: bioinformatics for microbiologists /

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Crop improvement under adverse conditions

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Crop production for agricultural improvement

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Data mining and applications in genomics

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Data production and analysis in population genomics: methods and protocols /

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Detection of non-amplified genomic DNA

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Diagnostics in plant breeding

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Dictionary of DNA and genome technology

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Diffusion and use of genomic innovations in health and medicine: workshop summary /

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Discovering biomolecular mechanisms with computational biology

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DNA microarrays and related genomics techniques: designs, analysis, and interpretation of experiments /

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Encyclopedic reference of genomics and proteomics in molecular medicine

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Environmental genomics

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Epigenomics

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Equine genomics

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Essential concepts in toxicogenomics

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Establishing precompetitive collaborations to stimulate genomics-driven product development: workshop summary /

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Ethical challenges in genomics research: a guide to understanding ethics in context /

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Evolution of translational omics: lessons learned and the path forward /

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Exercise genomics

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An Experimental Approach to Genome Annotation

"An Experimental Approach to Genome Annotation, (2004) details the continued work in genome annotation that will likely lead to new applications and progress in healthcare, bio-defense, energy, the environment, and agriculture. The report also discusses the critical challenges and ways to accelerate progress in the field of genome annotation."
American Academy of Microbiology (AAM) : Critical Issues Colloquia Reports

Exploring horizons for domestic animal genomics: workshop summary /

An electronic resource of: National Academy Press.

Exploring horizons for domestic animal genomics: workshop summary /

An electronic resource of: National Academy Press.

For better or for worse?: collaborative couples in the sciences /

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Functional genomics and evolution of photosynthetic systems

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Functional genomics in aquaculture

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Functional genomics: methods and protocols /

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Fundamentals of data mining in genomics and proteomics

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Fungal genomics

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Fungal genomics: methods and protocols /

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Gene biotechnology

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Gene discovery for disease models

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Gene function analysis

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Generating evidence for genomic diagnostic test development: workshop summary /

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Genetics and genomics of rosaceae

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Genetics and genomics of soybean

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Genetics and genomics of the brassicaceae

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Genetics and genomics of the triticeae

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Genetics, genomics and breeding of oilseed Brassicas

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Genome clustering: from linguistic models to classification of genetic texts /

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Genome exploitation: data mining the genome /

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Genome instability in cancer development

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Genome mapping and genomics in animal-associated microbes

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Genome mapping and genomics in arthropods

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Genome mapping and genomics in domestic animals

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Genome Mapping and Genomics in Domestic Animals

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Genome mapping and genomics in fishes and aquatic animals

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Genome mapping and genomics in laboratory animals

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Genome-based therapeutics: targeted drug discovery and development: workshop summary /

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Genome-wide prediction and analysis of protein-protein functional linkages in bacteria

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Genomes and genomics of nitrogen-fixing organisms

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Genomic approaches for cross-species extrapolation in toxicology: proceedings from the Workshop on Emerging Molecular and Computational Approaches for Cross-Species Extrapolations, 18-22 July 2004, Portland, Oregon, USA /

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Genomic disorders: the genomic basis of disease /

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The genomic revolution: unveiling the unity of life /

An electronic resource of: Joseph Henry Press, with the American Museum of Natural History.

The genomic revolution: unveiling the unity of life /

An electronic resource of: Joseph Henry Press, with the American Museum of Natural History.

Genomic Signal Processing and Statistics, 2009, GENSIPS 2009, IEEE International Workshop on

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Genomics and pharmacogenomics in anticancer drug development and clinical response

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Genomics and proteomics engineering in medicine and biology

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Genomics and proteomics engineering in medicine and biology

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Genomics and proteomics in nutrition

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Genomics applications for the developing world

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Genomics in endocrinology: DNA microarray analysis in endocrine health and disease /

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Genomics in regulatory ecotoxicology: applications and challenges /

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Genomics of chloroplasts and mitochondria

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Genomics of disease

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The Genomics of Disease-Causing Organisms : Mapping a Strategy for Discovery and Defense

"The Genomics of Disease-Causing Organism: Mapping a Strategy for Discovery and Defense, (2004), details the study of pathogenesis and how far we have come to having a complete understanding of pathogenesis and a phylogenetic framework for understanding the phenomenon."
American Academy of Microbiology (AAM) : Critical Issues Colloquia Reports

Genomics of foodborne bacterial pathogens

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Genomics of plants and fungi

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Genomics of the saccharinae

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Genomics of tropical crop plants

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Genomics protocols

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Genomics protocols

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Genomics, obesity and the struggle over responsibilities

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Genomics, proteomics, and clinical bacteriology: methods and reviews /

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Genomics, proteomics, and the nervous system

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Genomics-assisted crop improvement

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GENSIPS '07: Fifth IEEE International Workshop on Genomic Signal Processing and Statistics: June 1-12, 2007, Tuusula, Finland /

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GENSIPS '08: Sixth IEEE International Workshop on Genomic Signal Processing and Statistics: June 8-10, 2008, Phoenix, Arizona

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The genus Yersinia: from genomics to function /

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The Global Genome Question : Microbes as the Key to Understanding Evolution and Ecology

"The Global Genome Question: Microbes as the Key to Understanding Evolution and Ecology (2004), examines the current state of knowledge of microbial genomics, the technical challenges of using genomics in microbial systems, and the achievements that may now be possible by applying genomics to the study of microbiology. Makes recommendations for future directions in education and research."
American Academy of Microbiology (AAM) : Critical Issues Colloquia Reports

Glycomics

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Growth and defence in plants: resource allocation at multiple scales /

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A guide to QTL mapping with R/qtl

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Guide to yeast genetics: functional genomics, proteomics, and other systems analysis /

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Handbook of genomics and the family

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Handbook of maize: history and practice of genetics, genomics and improvement /

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Handbook of molecular microbial ecology II: metagenomics in different habitats /

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Hematopathology: genomic mechanisms of neoplastic diseases /

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Implications of genomics for public health: workshop summary /

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Implications of genomics for public health: workshop summary /

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Incredible anaerobes: from physiology to genomics to fuels /

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Indian Pandanaceae-- an overview

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Innovations in service delivery in the age of genomics: workshop summary /

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The Institution of Engineering and Technology Seminar on Signal Processing for Genomics: 9th November 2006, Abington Hall Conference Centre, Cambridge, UK /

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Introduction to computational biology: an evolutionary approach /

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Introduction to genomic signal processing with control

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Introduction to genomic signal processing with control

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An introduction to toxicogenomics

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Landscapes, genomics and transgenic conifers

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Legume crop genomics

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Legume crop genomics

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Lentil: an ancient crop for modern times /

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Linkage disequilibrium and association mapping: analysis and applications /

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Lotus japonicus handbook

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Mammalian embryo genomics

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Mammalian embryo genomics

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Marine Microbial Diversity : The Key to Earth's Habitability

"Marine Microbial Diversity: The Key to Earth's Habitability (December 2005), outlines how life on Earth may owe its existence to tiny microorganisms living in oceans, but the effect of human-induced change on the vital services these microbes perform for the planet remains largely unstudied."
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Marsupial genetics and genomics

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Meta-analysis and combining information in genetics and genomics

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Metabolome analyses: strategies for systems biology /

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Metagenomics of the human body

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Metagenomics: methods and protocols /

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Methods in genomic neuroscience

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Methods in genomic neuroscience

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Micro/nano technology for genomics and proteomics

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Microarray analysis of the physical genome: methods and protocols /

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Microbe World

"Explores bacteria, viruses, fungi and other microbes in an easy to understand format, and includes microbial facts, trivia and images of bacteria and algae."

Microbial Ecology and Genomics : A Crossroads of Opportunity

"Microbial Ecology and Genomics: A Crossroads of Opportunity (2002), examines the explosion of new information in microbial biology made available by recent advances in molecular technology--and looks at the important questions that remain. Recommends next steps for the integration of genomics with microbial systematics, evolution, and ecology."
American Academy of Microbiology (AAM) : Critical Issues Colloquia Reports

Microbial Forensics : A Scientific Assessment

"Microbial Forensics: A Scientific Assessment (2003), surveys this new field and makes recommendations about how to move it forward."
American Academy of Microbiology (AAM) : Critical Issues Colloquia Reports

Microbial Genomes : Blueprints for Life

"Microbial Genomes: Blueprints for Life (2000), details the enormous advances made possible through the genetic wealth and biological aptitude of microbes--and the new challenges arising from the advent of large-scale DNA sequencing. Discusses project selection and coordination, data management and analysis, training and education, funding, and ethics, and makes specific recommendations for future action."
American Academy of Microbiology (AAM) : Critical Issues Colloquia Reports

Microbial genomics and drug discovery

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Microbiology in the 21st Century : Where Are We and Where Are We Going?

"Microbiology in the 21st Century: Where Are We and Where Are We Going? (2004), this report details the central importance of microbes to life on earth, the direction microbiology research will take in the 21st Century and ways to foster public microbial literacy beginning at an elementary school level."
American Academy of Microbiology (AAM) : Critical Issues Colloquia Reports

MicroRNA cancer regulation: advanced concepts, bioinformatics and systems biology tools /

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Mobile genetic elements: protocols and genomic applications /

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Molecular analysis and genome discovery

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Molecular and biophysical mechanisms of arousal, alertness, and attention

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Momordica genus in Asia: an overview /

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Multiple testing procedures with applications to genomics

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Neuroanatomical tract-tracing 3: molecules, neurons, and systems /

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New science of metagenomics: revealing the secrets of our microbial planet /

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New science of metagenomics: revealing the secrets of our microbial planet /

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Nutrigenomics

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Nutrigenomics and beyond: informing the future: workshop summary /

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Nutrigenomics and beyond: informing the future: workshop summary /

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Nutritional genomics: the impact of dietary regulation of gene function on human disease /

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Organelles, genomes, and eukaryote phylogeny: an evolutionary synthesis in the age of genomics /

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Parasite genomics protocols

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Personalized nutrition: principles and applications /

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Pharmacogenomics: methods and protocols /

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Phylogenomics

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Phytochemicals: nutrient-gene interactions /

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Phytochemicals: nutrient-gene interactions /

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Plant acclimation to environmental stress

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Plant breeding for abiotic stress tolerance

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Plant breeding for biotic stress resistance

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Plant functional genomics

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Plant genome diversity: Volume 2,: Physical structure, behaviour and evolution of plant genomes

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Plant genomics: methods and protocols /

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Plant transposable elements: impact on genome structure and function /

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PMC : PubMed Central : An Archive of Life Sciences Journals

PubMed Central (PMC) is the U.S. National Library of Medicine's free digital archive of biomedical and life sciences journal literature. PubMed Central connects to full-text journal articles from 80+ peer-reviewed journals.
Search for articles by word in text, author, or journal title or Browse individual journals.

Polyploidy and genome evolution

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Power laws, scale-free networks and genome biology

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Primer on Molecular Genetics

This is a useful primer explaining the laboratory techniques involved in mapping and sequencing genomes and focusing on the Human Genome Project.

The authors Denise Casey and Dan Jacobsom originally wrote this primer for the 1991-92 DOE Human Genome Program Report so the bioinformatics-sections especially are not up-to-date. This version is hosted at Iowa State.

The primer covers:

Genetic linkage maps -- based on crossover (recombination);

Lo-resolution and High-resolution Physical mapping;

Sequencing technologies and construction of whole genomes;

Model organism research;

Glossary.

Principles of statistical genomics

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Proceedings of the 2003 IEEE Bioinformatics Conference: CSB 2003, 11-14 August, 2003, Stanford, California, USA

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Progress in botany: Vol. 68

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The Prokaryotes

This is an electronic-version of what was once the printed reference text The Prokaryotes 2nd ed. As of 2/2004 the online title is Version 3.15 and is more up-to-date than the printed text. There are quarterly updates.

The resources presented at this site can be viewed by keyword-search or by clicking the following categories:

FAQ: Frequently-Asked Questions - includes a tutorial on how the website is organized and how to find the Table of Contents.

Each of the following broad sections breaks down into subcategories in a chapter-reading frame-viewer:

-- Introductory Essays: Genomics, phylogeny, morphology, cell biology, and more.

-- Prokaryotic Ecophysiology and Biochemistry: Habitats and metabolic pathways.

-- Prokaryotic Organisms: Archaea and Bacteria, listed by class.

-- Symbiotic Associations: Relationships with different genera of plants and animals.

-- Biotechnology: Use in food and enzyme production, and bioremediation.

There is also "living tree" of the prokaryotes, showing the latest phylogenetic relationships, and links out to genomics databases and other sites.

Access is FREE to UC-users from UC computer-terminals.

Non-UC users should consult their reference-librarian about access-privileges at their institution, or go directly to Springer-Verlag site at http://www.springeronline.com/sgw/cda/frontpage/0,10735,3-10037-22-2011025-detailsPage%253Dppmmedia%257Ctoc%257Ctoc,00.html.

Protein nanotechnology: protocols, instrumentation, and applications /

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Pseudomonas syringae pathovars and related pathogens: identification, epidemiology and genomics /

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Rabbit biotechnology: rabbit genomics, transgenesis, cloning and models /

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Rat genomics: methods and protocols /

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Reaping the benefits of genomic and proteomic research: intellectual property rights, innovation, and public health /

An electronic resource of: National Academies Press.

Reaping the benefits of genomic and proteomic research: intellectual property rights, innovation, and public health /

An electronic resource of: National Academies Press.

RECOMB 2001: proceedings of the Fifth Annual International Conference on Computational Biology, April 22-25, 2001, Montreal, Canada

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RECOMB 2001: proceedings of the Fifth Annual International Conference on Computational Biology, April 22-25, 2001, Montreal, Canada /

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Regulatory genomics: RECOMB 2004 international workshop, RRG 2004, San Diego, CA., USA, March 26-27, 2004: revised selected papers /

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Research in computational molecular biology: 11th annual international conference, RECOMB 2007, Oakland, CA, USA, April 21-25, 2007: proceedings /

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Research in computational molecular biology: 12th annual international conference, RECOMB 2008, Singapore, March 30 - April 2, 2008: proceedings /

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Research in computational molecular biology: 14th annual international conference, RECOMB 2010, Lisbon, Portugal, April 25-28, 2010: proceedings /

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Rice biology in the genomics era

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Rice functional genomics: challenges, progress and prospects /

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Robustness, plasticity, and evolvability in mammals: a thermal niche approach /

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Root genomics

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Root genomics and soil interactions

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The science and applications of synthetic and systems biology: workshop summary /

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The science of algal fuels: phycology, geology, biophotonics, genomics and nanotechnology /

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Seeking security: pathogens, open access, and genome databases /

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Seeking security: pathogens, open access, and genome databases /

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Serial analysis of gene expression (SAGE): methods and protocols /

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Statistical genomics of quantitative traits: linkage, maps, and QTL /

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Stroke genomics: methods and reviews /

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Structural proteomics: high-throughput methods /

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Surrogate tissue analysis: genomic, proteomic and metabolomic approaches /

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Systems biology and regulatory genomics: Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA, December 2-4, 2005: revised selected papers /

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Systems biology: properties of reconstructed networks /

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Systems for research and evaluation for translating genome-based discoveries for health: workshop summary /

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Systems metabolic engineering

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Systems Microbiology : Beyond Microbial Genomics

"Systems Microbiology: Beyond Microbial Genomics, (December 2004), details the power of applying a systems approach to the study of biology and to microbiology, specifics about current research efforts, technical limitations, database requirements, education needs, and communication issues that surround the field of systems microbiology."
American Academy of Microbiology (AAM) : Critical Issues Colloquia Reports

Temperate fruit crop breeding: germplasm to genomics /

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Unravelling single cell genomics: micro and nanotools /

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The value of genetic and genomic technologies: workshop summary /

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Viruses: essential agents of life /

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Wild crop relatives: genomics and breeding resources: Cereals /

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Yeast functional genomics and proteomics: methods and protocols /

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ZFIN: The Zebrafish Model Organism Database

The BIG source for Zebrafish research (now Zebra danio, before 1993 Brachydanio rerio).

The center of the homepage has the following items:

Stocks (Mutant/Transgenic or Wild-Type) - Search by gene name, map location or phenotype.

Genes / Markers / Clones - Search by name, vector- or sequence- type.

Gene Expression - Search by gene name, developmental stage, anatomical structure, developmental or physiological process.

Genetic Maps - Generate graphical views of genetic, radiation hybrid or consolidated maps.

Publications - Search for zebrafish research publications by author, title or citation.

People - Search for zebrafish researchers by name or address.

Laboratories - Search by name, address or research interests.

Companies - Search for companies supplying zebrafish reagents.

Under Information and News on the lefthand frame, find:

Anatomical Atlases.

The Zebrafish Book by Monte Westerfield - a guide for the laboratory use of zebrafish.

The Zebrafish Science Monitor - research news and current methods.

Jobs and Meetings/Conferences.

Zebrafish for K-12 schoolchildren.

Under Zebrafish Resource Center, find:

Strains

Genetic Probes - sources for BAC, PAC, YAC and cDNA libraries.

Pathology Services from University of Oregon, Eugene.

Diseases of Zebrafish in Research Facilities, by M.L. Kent, J.M. Spitsbergen, J.M. Matthews, J.W. Fournie and M. Westerfield.

Under Genomics - links to other Zebrafish resources and Initiatives.

Under Nomenclature - how to name genes and designate alleles.

Last modified: 5/12/2009 1:03 PM by J. Mason